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Created with Raphaël 2.2.027Jan26252019181514121110987654330Dec292827171475230Nov20191413121110931Oct20Sep14131211109131Aug27262524201916151413121110Update reps used for override metadataFix aggrQC if bracketsFix paramsMake tracking upload optionUpdate pytest to utilize paramsFix stranded variableUpdate pytestsFix bracketRevert SE integration test and server for all integrationsChange replicate for SE integrationFix echo lineRemove extra quoteAdd new py tests for integration and overrideFix new force var namesRemove unnecessary excapeAdd missing excapesFix qutes to echoAdd qutes to echoAdd force params for stranded and spikeDouble excape slashExcape bash varsUpdate create test data with new metadata modelUpdate create test data with new metadata modelURLify hatrac location for outputBagFix getRef use of new spike valuesUpdate parseMetadata ci testTemporarily change CI integration tests to use dev server (staging doesn't have model changes)Change logic for uploadOutputBagMerge data error pre-Execution runAdd blank mRNA_QC on data failRemove unnecessary RID output parsingConvert strandedness from yes/no to t/fConvert strandedness from yes/no to t/fUpdate Has_Strand_Specific_Information to StrandednessUpdate Sequencing_Type to Experiment_TypeAllow Single Read for backwards compatibilityFix Single Read in CIUpdate changelogChange Single Read to Single EndMerge branch 'develop' into 'master'