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GUDMAP_RBK
RNA-seq
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e108c736ccf54f4e3c3dca26e5bb9759519a576b
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develop
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master
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v2.0.1
v2.0.0
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v1.0.1
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0.0.4_indev
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Sep
remove jar version.
remove seqtk and update output for stdout.
Fix test stage name.
Add in software versions and references.
Updaated documents and changelog and usage statement.
Add changelong.
fix typo in name of pipeline.
Update config for email.
Test failure.
Update consistency checks to be fully in python.
Reduce species inference cutoffs
0.0.4_indev
0.0.4_indev
Merge branch '23-ref.to.datahub' into 'develop'
Update docs/dag.png
Fix elif
Fix datahub specific bed folder move
Auto pep8'd all python code
Update changelog
Fix ref move after getRef datahub pull
Update docs
Add refName to getRef
Fix pulled ref mv
Move bed only on non ERCC
Add search for ERCC ref
Combine inputs for getRefInfer
Remove collect for getRefInfer
Use channel
Add extractRefData.py as channel
Revert each
Try each refInfer
Fix curl query
Add refSource to param table
Add deriva auth to getRef
Update datahub ref download
Update deriva and python containers in config
Add datahub fetch for pipeline
Update ref unit test for datahub
Split grep from pipe from python
Fix extractRefData arg
Change datahub ref ci form get to ls
Use new gudmaprbk dockerhub deriva1.3 for ref unit