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Created with Raphaël 2.2.028Jan2726252019181514121110987654330Dec292827171475230Nov20191413121110931Oct20Sep14131211109131Aug27262524201916151413Convert blank nan submitted metadata to No valueUpdate version to 2.0.0rc01Add multiqc html to ci artifacts for override testsTry excaping tabs for metadata override for reportUpdate DAGFix metadata echoFix spike override testChange replicates for metadata overridesFix stranded overrideUpdate reps used for override metadataFix aggrQC if bracketsFix paramsMake tracking upload optionUpdate pytest to utilize paramsFix stranded variableUpdate pytestsFix bracketRevert SE integration test and server for all integrationsChange replicate for SE integrationFix echo lineRemove extra quoteAdd new py tests for integration and overrideFix new force var namesRemove unnecessary excapeAdd missing excapesFix qutes to echoAdd qutes to echoAdd force params for stranded and spikeDouble excape slashExcape bash varsUpdate create test data with new metadata modelUpdate create test data with new metadata modelURLify hatrac location for outputBagFix getRef use of new spike valuesUpdate parseMetadata ci testTemporarily change CI integration tests to use dev server (staging doesn't have model changes)Change logic for uploadOutputBagMerge data error pre-Execution runAdd blank mRNA_QC on data failRemove unnecessary RID output parsing