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Created with Raphaël 2.2.020Jan19181514121110987654330Dec292827171475230Nov20191413121110931Oct20Sep14131211109131Aug2726252420191615141312111087654331Jul30Fix no fastq error detailFix no fastq's present in inputBagUpgrade version to v1.0.3Fix file structure error detectionFix if thenFix endsManual assignmentFix fastq file error detectionMake dummy fastqc output if failDetect malformed fastqsFix spike/species asignment for unexpectedFix python else syntacFurther remove parsing restrictions from stranded/spike/speciesRemove ability to count fastqs manually from file.csvDon't parse manual ends from file.csv anymoreFix elifHandle blank endness betterRemove redundant check for multiple fastqs in parse metadataAllow .R[1,2] and _R[1,2] fastqsFilter input bag export config to only get fastq's matching conventionOnly used fastq's named correctlyPhysically move fastqc process upFix fastq run before trimMove fastqc before trimUpdate changelogAllow unexpected values for stranded/spike/speciesUpdate changelogMove mem param to sortCopy samtools mem param fix to align sampleDouble excape *Add -m to samtools sortMerge resolutionv1.0.2v1.0.2Update CHANGELOG.mdMerge branch '104-misspelled-process-name' into 'develop'Update software versions.Remove deriva from the ci.Add in missinng process config.Update CHANGELOG.md for version 1.0.2Update biohpc.configUpdate aws.configFix process name in config file