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Created with Raphaël 2.2.010Sep9131Aug2726252420191615141312111087654331Jul3023151420May13116542130Apr27252422732130Mar2726242321201918161514131298628Feb18171514121110743230Jan29282724232221201918171514136311Dec9325Nov2015141186431Oct30292823161511812SepAdd --no-dep to conda createFix CI lint and replicate env in hu testCreate deriva python env in ci until deriva1.3 docker image availableLink deriva auth cookie for datahub get refAdd extractRefData.pyFix CI lintPut getRef in CI stage and add get from datahubAdd param for ref sourceMerge branch 'cherry-pick-927e3ba6' into 'develop'Add started time to multiqc #770.0.30.0.3Add started time to multiqc #77Update CHANGELOG.md, workflow/nextflow.config filesUpdate CHANGELOG.md, workflow/nextflow.config filesMerge branch 'develop' into 'master'Update .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlMerge branch '0.0.3' into 'develop'Spellcheck changelogFix CI lintSpecify when to run CI tests #76Update docs/dag.pngAdd species overrideRe-add multiqc html report to integration artifactsFix fastqsForce param in CIUpdate override repRID to match inputsFix CI lintMove Override stage in CI to integration (and update bag test-data locationUpdate bagit to bag in createTestDataFix CI lintUpdate multiqc run table for reporting convenience #72Add fastq override #71Add CI test for inputBag overrideAllow override for input bagit #61