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Created with Raphaël 2.2.05Aug4331Jul3023151420May13116542130Apr27252422732130Mar2726242321201918161514131298628Feb18171514121110743230Jan29282724232221201918171514136311Dec9325Nov2015141186431Oct30292823161511812SepExtract raw readsRemove dummy fastqcRemove number formats from multiqc configChange innerDistance removal for SE to SE matadata checkFix assigned read extractionFixt assignedReads handlingFix countData unit summary file nameRemove intermediate bash variablesFix echo grepsFix assigned reads extractionAdd new metadata extraction to ciExtract assigned reads countRound median TIN to 2 dpFix median read length for SEFix measure read lengthFix median TIN outputFix extract median TINCalculate median TIN and display in reportFix input of parse read lengthNextflow-ify bash command to extract median read lengthNextflow-ify bash command to extract median read lengthNextflow-ify bash command to extract median read lengthNextflow-ify bash command to extract median read lengthMeasure median trimmed read length and display in multiqc table reportFix parseMetadata unit testMove read length num to str to python scriptConvert num read length to str in bashOutput read length as strExtract read length from submitter metadataMerge branch 'ci' into 'develop'Fix consistency module #27Move expected assigned into ci.yml #27Add consistency tests #27Add -q nextflow flag in ci to test (needs to run code after nextflow)Remove -bg nextflow flag in ci to testRemove cache dependencies #27Fix cache dependencies #27Setup dummy se conssistency test with cache dependenciesAdd qc outputs from integration tests for consistency tests #27Test for pytest for parseMetadata: remove unnecessary print #54