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Created with Raphaël 2.2.02Mar128Feb242319181615131211109874129Jan282726252019181514121110987654330Dec292827171475230Nov20191413121110931Oct20Sep1413Fix downsample ciFix multiqcFix tabing in multiqc configAdd seqtk to referencesFix extra tab in seqwho multiqc tsvFix no download for fastqForceTry to fix fastq count with fastq overrideFix endsForce testFix ends forceChange getData fastqForce varible to paramSet fastq count temporarily to zero if overriddenFix seqwho tsv output for multiqcAdd ends overrideDon't donwload fastqs if overriddenUpdate changelogFix seqwho multiqc tableAdd seqwho infer QC table to multiqcAdd missing speciesError to whenPut multiple when's into a single lineAdd handeling for low confidence seq typeDisconnect confidence from species and seq type inferenceAdd quotes to seqwho errorAdd quotes to seqwho errorMerge dnanexus changesFix nf reference in ciMove nf and confs to match nextflow formatAdd back mkdir -p in seqwho unit testTry removing ./ from seqwho -f in unit testMake dummy dir for plotsFix seqwho version collection in ciUse datahub as source for integration_se ciFix ci lintReplace species inference with seqwhoMerge branch 'dnanexus' into 'develop'Change nextflow run locations for CI to rootMerge branch 'develop' into 'dnanexus'Update file refs in .nf to match new locationsUpdate CHANGELOGAdd dnanexusExample.json fileUpdate README.md