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Created with Raphaël 2.2.019Jan181514121110987654330Dec292827171475230Nov20191413121110931Oct20Sep14131211109131Aug2726252420191615141312111087654331Jul30Remove ability to count fastqs manually from file.csvDon't parse manual ends from file.csv anymoreFix elifHandle blank endness betterRemove redundant check for multiple fastqs in parse metadataAllow .R[1,2] and _R[1,2] fastqsFilter input bag export config to only get fastq's matching conventionOnly used fastq's named correctlyPhysically move fastqc process upFix fastq run before trimMove fastqc before trimUpdate changelogAllow unexpected values for stranded/spike/speciesUpdate changelogMove mem param to sortCopy samtools mem param fix to align sampleDouble excape *Add -m to samtools sortMerge resolutionv1.0.2v1.0.2Update CHANGELOG.mdMerge branch '104-misspelled-process-name' into 'develop'Update software versions.Remove deriva from the ci.Add in missinng process config.Update CHANGELOG.md for version 1.0.2Update biohpc.configUpdate aws.configFix process name in config fileMerge resolutionv1.0.1v1.0.1Update CHANGELOG.mdMerge branch '101-bug.failPreExecution' into 'develop'Update dage and software versionFix script nameUpdate manifest versionFix mistype errorUpdate changelogChange replicate count for badges to count all replicates that match major version numberOutput execution run rid to tracking for fail and failPre ExecutionAdd ambiguous species, trunkated fastq, R1/R2 mismatch to integration testsSplit failPreExecution into 2 processes