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Created with Raphaël 2.2.025Jan2019181514121110987654330Dec292827171475230Nov20191413121110931Oct20Sep14131211109131Aug27262524201916151413121110876543Add blank mRNA_QC on data failRemove unnecessary RID output parsingConvert strandedness from yes/no to t/fConvert strandedness from yes/no to t/fUpdate Has_Strand_Specific_Information to StrandednessUpdate Sequencing_Type to Experiment_TypeAllow Single Read for backwards compatibilityFix Single Read in CIUpdate changelogChange Single Read to Single EndMerge branch 'develop' into 'master'Update errors in readmeMerge branch '108-samtools.mem' into 'develop'Update DAGUse 1 less process for samtools threading and limit memto 75% of availableMake sampled align use > 32GB nodes on BioHPCCatch error if fastq file error grepFix fastqc error detectionAdd back ends manual to parse ci unitAdd back ends manual to ci unit for parse, but manualAdd unexpected meta and fastq structure error ci integration testsAdd excape to bracket in echoRemove ends manual from parse metadata unit ciAdd premature fail execution run upload with fastq file errorFix no fastq error detailFix no fastq's present in inputBagUpgrade version to v1.0.3Fix file structure error detectionFix if thenFix endsManual assignmentFix fastq file error detectionMake dummy fastqc output if failDetect malformed fastqsFix spike/species asignment for unexpectedFix python else syntacFurther remove parsing restrictions from stranded/spike/speciesRemove ability to count fastqs manually from file.csvDon't parse manual ends from file.csv anymoreFix elifHandle blank endness better