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GUDMAP_RBK
RNA-seq
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4cdee6d3bf38f20597798d0b3ae6a2f94998b67e
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Sep
Test for pytest for parseMetadata: supposed to pass #54
Test for pytest for parseMetadata: supposed to pass #54
Test for pytest for parseMetadata: supposed to pass #54
Fail test for pytest for parseMetadata passed, test pass #54
Fix pytest for parseMetadata: expect fail #54
Add pytest for parseMetadata: expect fail #54
Fix dataQC unit test: addition worked #48
Test unit test addition for #48
Add initial trial for dataQC unit improvement #48
Merge branch 'aws.batch' into 'develop'
Add back trackStart process
Update merge request template
Update dag
Add fastqc commad to unit now that using singularity run
Revert fastq unit to singularity run
Try singularity exec for fastqc unit test
Add new docker images to CI
Update README.md
AWS Batch works
Merge branch '10-process.aggregateQC' into 'develop'
Move createTestData to test_data
Update docs/dag.png
Update README.md
Return background run to integratiion
Reformat runtime info
Remove nextflow -bg from integration test
Add pipeline version var to track
Update nextflow and singularity versions in CI
Fix param reference in runtime info
Add runtime info
Add unsorted deduped bam to test_data creation
Fix new CI unit tests
Add script to create test data
Update CI unit tests to use repRID Q-Y5F6
Add unit test run for all mea parseta parsed
Fix cp error for fastq names with multiple R1/2
Stage experiment settings as ExperimentSettings.csv to prevent bash error
Add source param for getBag #50
Fix fastq output name fix
Fix fastq output name