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Created with Raphaël 2.2.030Jul23151420May13116542130Apr27252422732130Mar2726242321201918161514131298628Feb18171514121110743230Jan29282724232221201918171514136311Dec9325Nov2015141186431Oct30292823161511812SepTest for pytest for parseMetadata: supposed to pass #54Test for pytest for parseMetadata: supposed to pass #54Test for pytest for parseMetadata: supposed to pass #54Fail test for pytest for parseMetadata passed, test pass #54Fix pytest for parseMetadata: expect fail #54Add pytest for parseMetadata: expect fail #54Fix dataQC unit test: addition worked #48Test unit test addition for #48Add initial trial for dataQC unit improvement #48Merge branch 'aws.batch' into 'develop'Add back trackStart processUpdate merge request templateUpdate dagAdd fastqc commad to unit now that using singularity runRevert fastq unit to singularity runTry singularity exec for fastqc unit testAdd new docker images to CIUpdate README.mdAWS Batch worksMerge branch '10-process.aggregateQC' into 'develop'Move createTestData to test_dataUpdate docs/dag.pngUpdate README.mdReturn background run to integratiionReformat runtime infoRemove nextflow -bg from integration testAdd pipeline version var to trackUpdate nextflow and singularity versions in CIFix param reference in runtime infoAdd runtime infoAdd unsorted deduped bam to test_data creationFix new CI unit testsAdd script to create test dataUpdate CI unit tests to use repRID Q-Y5F6Add unit test run for all mea parseta parsedFix cp error for fastq names with multiple R1/2Stage experiment settings as ExperimentSettings.csv to prevent bash errorAdd source param for getBag #50Fix fastq output name fixFix fastq output name