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Created with Raphaël 2.2.022Apr732130Mar2726242321201918161514131298628Feb18171514121110743230Jan29282724232221201918171514136311Dec9325Nov2015141186431Oct30292823161511812SepFix align unit summary outputChange parseMetadata CI unit test to match new mechanismAdd inference and apply new naming standardsReorder processesMerge develop into branchAdd align sampled dataMerge branch '45-parallelizeTin' into 'develop'Fix nextflow/runner error, change singularity cache, and limit processes in unit ci to 20Update docs/dag.pngFix infer.csv outputDeleted dag.pngMerge branch 'develop' into '45-parallelizeTin'Update pipeline statusUpdate rna-seq.nfUpdate rna-seq.nfChanged infer.tsv back to infer.csv with appropriate formatting changes.Added new dag.pngCorrected typo in dedup step.Used betterd CHRs for tests.Fixed typoUpdated inferMetadata testing scriptUpdated inferMetadata testing scriptUpdated inferMetadata testing scriptUpdate test_dedupReads.pyUpdate test_dedupReads.pyUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate .gitlab-ci.ymlUpdate test_dedupReads.pyUpdate test_dedupReads.pyCorrection to .gitlab-ci.ymlUpdate test_dedupReads.py to include split, testing chr1, chr2, chr8Update .gitlab-ci.yml to include splitting the BAM and BAI files.Parallelized inferMetaData's TIN calculation.Add unlimit -a to ci integration tests