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Created with Raphaël 2.2.013Aug12111087654331Jul3023151420May13116542130Apr27252422732130Mar2726242321201918161514131298628Feb18171514121110743230Jan29282724232221201918171514136311Dec9325Nov2015141186431Oct30292823161511812SepRemove Illumina addapter trim restriction, set to default (auto) and limit cores to 4Put 10sec delay between study launch + 25 parallelAdd unit test for outputBagAdd inital output bag creationOuput inputBagMerge branch 'develop' into 'master'v0.0.1v0.0.1Version to 0.0.1Merge branch 'new.qc.out' into 'develop'Convert string to int for range checking in consistency testChange consistence test from exact match to within 1/100,000 change from expectedUpdate dagConvert gene symbols to EntrezID in count/tpm tableAdd instructions for running from study RIDAdd scripts to run from study RIDAdd rounding to numbers in multiqc tableFix tin table in multiqcRemove quotes and colons from multiqc custom tablesAdd quotes to multiqc tablesFix raw read outputFix raw count calculationFix raw read count to R1Extract raw readsRemove dummy fastqcRemove number formats from multiqc configChange innerDistance removal for SE to SE matadata checkFix assigned read extractionFixt assignedReads handlingFix countData unit summary file nameRemove intermediate bash variablesFix echo grepsFix assigned reads extractionAdd new metadata extraction to ciExtract assigned reads countRound median TIN to 2 dpFix median read length for SEFix measure read lengthFix median TIN outputFix extract median TINCalculate median TIN and display in reportFix input of parse read length