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Resolve "Add automated download of bagit through deriva"

Merged Gervaise Henry requested to merge 15-auto.bagit.download into develop
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@@ -4,10 +4,12 @@ process {
clusterOptions = '--hold'
// Process specific configuration
withName:splitData {
withName:getBag {
executor = 'local'
container = 'docker://bicf/gudmaprbkfilexfer:1.1'
}
withName:getData {
executor = 'local'
container = 'docker://bicf/gudmaprbkfilexfer:1.1'
}
withName:trimData {
@@ -48,3 +50,11 @@ env {
https_proxy = 'http://proxy.swmed.edu:3128'
all_proxy = 'http://proxy.swmed.edu:3128'
}
manifest {
homePage = 'https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq'
description = 'This pipeline was created to analize RNA-sequencing data from GUDMAP/RBK consortiums.'
mainScript = 'rna-seq.nf'
version = 'v0.0.1_indev'
nextflowVersion = '>=19.09.0'
}