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Merged Gervaise Henry requested to merge develop into 15-auto.bagit.download
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before_script:
 
- module add python/3.6.1-2-anaconda
 
- pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1
 
- module load singularity/3.0.2
 
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/cookies/deriva-cookies.txt ./test_data/
 
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/File_Q-Y53P.zip ./test_data/
 
 
stages:
 
- unit
 
 
unit:
 
stage: unit
 
script:
 
- singularity run 'docker://bicf/bdbag:1.0' bdbag --materialize ./test_data/File_Q-Y53P.zip
 
- singularity run 'docker://bicf/bdbag:1.0' bdbag --validate full ./test_data/File_Q-Y53P/
 
- if [[ $(md5sum test_data/File_Q-Y53P/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt | awk '{ print $1 }') != $(cat test_data/File_Q-Y53P/data/File.csv | cut -d ',' -f10 | tail -1) ]]; then exit 21; fi;