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Resolve "Add Unit Tests for splitData and getData processes"

Merged Jeremy Mathews requested to merge 14-UnitTest into develop
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.gitlab-ci.yml 0 → 100644
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before_script:
- module add python/3.6.1-2-anaconda
- pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1
- module load singularity/3.0.2
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/cookies/deriva-cookies.txt ./test_data/
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/File_Q-Y53P.zip ./test_data/
stages:
- unit
unit:
stage: unit
script:
- singularity run 'docker://bicf/bdbag:1.0' bdbag --materialize ./test_data/File_Q-Y53P.zip
- singularity run 'docker://bicf/bdbag:1.0' bdbag --validate full ./test_data/File_Q-Y53P/
- if [[ $(md5sum test_data/File_Q-Y53P/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt | awk '{ print $1 }') != $(cat test_data/File_Q-Y53P/data/File.csv | cut -d ',' -f10 | tail -1) ]]; then exit 21; fi;