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Merged Gervaise Henry requested to merge develop into master
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@@ -231,10 +231,10 @@ integration_se:
@@ -231,10 +231,10 @@ integration_se:
- output/report/
- output/report/
- SE_multiqc_data.json
- SE_multiqc_data.json
expire_in: 7 days
expire_in: 7 days
retry:
retry:
max: 1
max: 1
when:
when:
- always
- always
integration_pe:
integration_pe:
stage: integration
stage: integration
@@ -257,17 +257,18 @@ integration_pe:
@@ -257,17 +257,18 @@ integration_pe:
- output/report/
- output/report/
- PE_multiqc_data.json
- PE_multiqc_data.json
expire_in: 7 days
expire_in: 7 days
retry:
retry:
max: 1
max: 1
when:
when:
- always
- always
override_inputBag:
override_inputBag:
stage: integration
stage: integration
only:
only:
- merge_requests
- merge_requests
 
except:
refs:
refs:
- develop
- master
script:
script:
- hostname
- hostname
- ulimit -a
- ulimit -a
@@ -279,17 +280,18 @@ override_inputBag:
@@ -279,17 +280,18 @@ override_inputBag:
paths:
paths:
- inputBagOverride_PE_multiqc_data.json
- inputBagOverride_PE_multiqc_data.json
expire_in: 7 days
expire_in: 7 days
retry:
retry:
max: 1
max: 1
when:
when:
- always
- always
override_fastq:
override_fastq:
stage: integration
stage: integration
only:
only:
- merge_requests
- merge_requests
 
except:
refs:
refs:
- develop
- master
script:
script:
- hostname
- hostname
- ulimit -a
- ulimit -a
@@ -301,16 +303,15 @@ override_fastq:
@@ -301,16 +303,15 @@ override_fastq:
paths:
paths:
- fastqOverride_PE_multiqc_data.json
- fastqOverride_PE_multiqc_data.json
expire_in: 7 days
expire_in: 7 days
retry:
retry:
max: 1
max: 1
when:
when:
- always
- always
override_species:
override_species:
stage: integration
stage: integration
only:
only:
- merge_requests
- merge_requests
- tags
except:
except:
refs:
refs:
- master
- master
@@ -325,10 +326,10 @@ override_species:
@@ -325,10 +326,10 @@ override_species:
paths:
paths:
- speciesOverride_PE_multiqc_data.json
- speciesOverride_PE_multiqc_data.json
expire_in: 7 days
expire_in: 7 days
retry:
retry:
max: 1
max: 1
when:
when:
- always
- always
consistency:
consistency: