aws.batch

AWS Batch-ify the pipeleine (including adding active aws configs). Update docker images to AWS compatible images

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated
• Replace dag.png with the most recent CI pipleine integrated_pe artifact
• CHANGELOG.md is updated
• README.md is updated
• Docker images moved to production release and changed in pipeline
• Docker images used in the CI unit tests match those used in pipleine

• Close issue
  Closes #

/cc @ghenry @venkat.malladi

.gitlab-ci.yml

@@ -112,7 +112,7 @@ makeBigWig:
 fastqc:
   stage: unit
   script:
-  - singularity exec 'docker://bicf/fastqc:2.0.1_indev' ./test_data/fastq/small/Q-Y5F6_1M.R1.fastq.gz -o .
+  - singularity run 'docker://bicf/fastqc:2.0.1_indev' ./test_data/fastq/small/Q-Y5F6_1M.R1.fastq.gz -o .
   - pytest -m fastqc
 
 dataQC: