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GUDMAP_RBK
RNA-seq
Merge requests
!18
Resolve "process_fastqc"
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Resolve "process_fastqc"
9-fastqc
into
develop
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Merged
Gervaise Henry
requested to merge
9-fastqc
into
develop
5 years ago
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4
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7
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Fastqc on untrimmed fasts’s
PR checklist
This comment contains a description of changes (with reason)
If you've fixed a bug or added code that should be tested, add tests!
Close issue
Closes
#9 (closed)
/cc
@ghenry
@venkat.malladi
Edited
5 years ago
by
Venkat Malladi
0
0
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develop
version 1
850d99f8
5 years ago
develop (base)
and
latest version
latest version
645546fa
7 commits,
5 years ago
version 1
850d99f8
6 commits,
5 years ago
7 files
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workflow/conf/aws_ondemand.config
+
5
−
2
Options
@@ -11,7 +11,7 @@ process {
executor
=
'awsbatch'
queue
=
'highpriority-3278a8b0-1fc8-11ea-b1ac-021e2396e2cc'
cpus
=
1
memory
=
'
1
GB'
memory
=
'
2
GB'
withName
:
parseMetadata
{
cpus
=
5
@@ -25,10 +25,13 @@ process {
}
withName
:
alignData
{
cpus
=
50
memory
=
'
10
GB'
memory
=
'
5
GB'
}
withName
:
dedupData
{
cpus
=
2
memory
=
'20 GB'
}
withName
:
fastqc
{
memory
=
'5 GB'
}
}
\ No newline at end of file