Resolve "process_getRef"

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!

• Close issue
  Closes #29 (closed)

/cc @ghenry @venkat.malladi

workflow/scripts/parseMeta.py

@@ -10,7 +10,7 @@ def get_args():
     parser.add_argument('-r', '--repRID',help="The replicate RID.",required=True)
     parser.add_argument('-m', '--metaFile',help="The metadata file to extract.",required=True)
     parser.add_argument('-p', '--parameter',help="The parameter to extract.",required=True)
-    parser.add_argument('-e', '--endsManual',help="The endness.",required=False)
+    parser.add_argument('-e', '--ends',help="The endness.",required=False)
     args = parser.parse_args()
     return args
 
@@ -56,7 +56,11 @@ def main():
     # Get strandedness metadata from 'Experiment Settings.csv'
     if (args.parameter == "stranded"):
         if (metaFile.Has_Strand_Specific_Information.unique() == "yes"):
-            if (args.endsManual=="se"):
+<<<<<<< HEAD
+            if (args.ends == "se"):
+=======
+            if args.ends == "se":
+>>>>>>> Fix args ends passage
                 stranded = "--rna-strandness F"
             elif (args.endsManual=="pe"):
                 stranded = "--rna-strandness FR"