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Combine align and dedup

#4 (closed) and #5 (closed)

using sambamba to dedup with align process

Also: correct line 230 in .nf (getRef) escape - in -S for spike if statement

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Gervaise Henry changed milestone to %v0.0.1 5 years ago

changed milestone to %v0.0.1
Gervaise Henry added Doing label 5 years ago

added Doing label
Gervaise Henry added To Do label and removed Doing label 5 years ago

added To Do label and removed Doing label
Gervaise Henry added Doing label and removed To Do label 5 years ago

added Doing label and removed To Do label
Gervaise Henry closed 5 years ago

closed
Gervaise Henry removed Doing label 5 years ago

removed Doing label

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