Commits · edd49982b2d75c86922010b4b77a2c1f6faf07de · GUDMAP_RBK / RNA-seq

Feb 24, 2021
- Move nf and confs to match nextflow format · f8eeebc2
  Gervaise Henry authored 4 years ago
  
  f8eeebc2
Feb 23, 2021
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Feb 19, 2021
- Move non nextflow configs back to workflow and symlink files · 4bd19e37
  Gervaise Henry authored 4 years ago
  
  4bd19e37
- Utilize seq type inference from seqwho · 3c5f30fb
  Gervaise Henry authored 4 years ago
  
  3c5f30fb
Feb 12, 2021
- Move fastq count before cp · 821a0f05
  Gervaise Henry authored 4 years ago
  
  821a0f05
- Change bdbag to use cookie locally · 785c4858
  Gervaise Henry authored 4 years ago
  
  785c4858
Feb 11, 2021
- Nextflow-ify · 0a4b00a6
  Gervaise Henry authored 4 years ago
  
  0a4b00a6
Feb 10, 2021
- Add local configs · 76775df8
  Gervaise Henry authored 4 years ago
  
  76775df8
- Fix datahub ref download · 9d37cf2a
  Gervaise Henry authored 4 years ago
  
  9d37cf2a
Feb 09, 2021
- Add dnanexus configs · ec4e0c7e
  Gervaise Henry authored 4 years ago
  
  ec4e0c7e
- Start implementing seqwho · 34803354
  Gervaise Henry authored 4 years ago
  
  34803354
Feb 04, 2021
- Fix · b507ecd7
  Gervaise Henry authored 4 years ago
  
  b507ecd7
Jan 29, 2021
- Correct reference var name · 9cccaef7
  Gervaise Henry authored 4 years ago
  
  9cccaef7
- Fix bool spike override in getRef · 3235c1c4
  Gervaise Henry authored 4 years ago
  
  3235c1c4
- Fix getRef for spike · ced21083
  Gervaise Henry authored 4 years ago
  
  ced21083
Jan 28, 2021
- Move spike/stranded override to infer (like species), not submitter · 0bb07de4
  Gervaise Henry authored 4 years ago
  
  0bb07de4
- Convert blank nan submitted metadata to No value · 37a1345e
  Gervaise Henry authored 4 years ago
  
  37a1345e
- Update version to 2.0.0rc01 · 6961db25
  Gervaise Henry authored 4 years ago
  
  6961db25
- Try excaping tabs for metadata override for report · b1cdf286
  Gervaise Henry authored 4 years ago
  
  b1cdf286
- Fix metadata echo · 329dc950
  Gervaise Henry authored 4 years ago
  
  329dc950
Jan 27, 2021
- Fix stranded override · 04c81525
  Gervaise Henry authored 4 years ago
  
  04c81525
- Fix aggrQC if brackets · 8a1299d4
  Gervaise Henry authored 4 years ago
  
  8a1299d4
- Fix params · 502328a7
  Gervaise Henry authored 4 years ago
  
  502328a7
- Make tracking upload option · df96927b
  Gervaise Henry authored 4 years ago
  
  df96927b
- Update pytest to utilize params · 1d912493
  Gervaise Henry authored 4 years ago
  
  1d912493
- Fix stranded variable · 09dd7af3
  Gervaise Henry authored 4 years ago
  
  09dd7af3
- Update pytests · a32879db
  Gervaise Henry authored 4 years ago
  
  a32879db
Jan 26, 2021
- Fix bracket · 14b8fc1d
  Gervaise Henry authored 4 years ago
  
  14b8fc1d
- Revert SE integration test and server for all integrations · 37bec34c
  Gervaise Henry authored 4 years ago
  
  37bec34c
- Fix echo line · 4f9bc352
  Gervaise Henry authored 4 years ago
  
  4f9bc352
- Remove extra quote · 6b085ad6
  Gervaise Henry authored 4 years ago
  
  6b085ad6
- Add new py tests for integration and override · ecd4e76f
  Gervaise Henry authored 4 years ago
  
  ecd4e76f
- Fix new force var names · 57529bc9
  Gervaise Henry authored 4 years ago
  
  57529bc9
- Remove unnecessary excape · a3d8f200
  Gervaise Henry authored 4 years ago
  
  a3d8f200
- Add missing excapes · e7024f45
  Gervaise Henry authored 4 years ago
  
  e7024f45
- Fix qutes to echo · 4d50fe8f
  Gervaise Henry authored 4 years ago
  
  4d50fe8f
- Add qutes to echo · c03c60c9
  Gervaise Henry authored 4 years ago
  
  c03c60c9
- Add force params for stranded and spike · 59cb654a
  Gervaise Henry authored 4 years ago
  
  59cb654a
- Double excape slash · 0511ac1a
  Gervaise Henry authored 4 years ago
  
  0511ac1a
- Excape bash vars · b390a5e5
  Gervaise Henry authored 4 years ago
  
  b390a5e5