Commits · 38d411ee1b85455d31fb8cfd96d94e7b2771ee5f · GUDMAP_RBK / RNA-seq

Jul 23, 2020
- AWS Batch works · 9fe16dfb
  Gervaise Henry authored 4 years ago
  
  9fe16dfb
Apr 30, 2020
- Add all reports(except metadata) · 4e0779da
  Gervaise Henry authored 4 years ago
  
  4e0779da
Apr 25, 2020
- Change pipeline tracking to curl · ef4ac234
  Gervaise Henry authored 4 years ago
  
  ef4ac234
- Add trackStart · 53505b86
  Gervaise Henry authored 4 years ago
  
  53505b86
Apr 22, 2020
- Add inference and apply new naming standards · 53c34278
  Gervaise Henry authored 4 years ago
  
  53c34278
Apr 07, 2020
- Add align sampled data · 2b89cc74
  Gervaise Henry authored 4 years ago
  
  2b89cc74
Mar 24, 2020
- Add dowsampling trimmed fastqs · 3b4d0255
  Gervaise Henry authored 5 years ago
  
  3b4d0255
Mar 06, 2020
- Added feature counts process. · 6675415d
  Jonathan Gesell authored 5 years ago
  
  6675415d
Feb 28, 2020
- Mod some infer meta · 4a68865f
  Gervaise Henry authored 5 years ago
  
  4a68865f
Feb 14, 2020
- Add infer_experiment.py · 3c12e9c1
  Gervaise Henry authored 5 years ago
  
  3c12e9c1
Feb 07, 2020
- Added pytest for makeBigWig. · 9363735e
  Jonathan Gesell authored 5 years ago
  
  9363735e
Feb 03, 2020
- Add initial fastqc · f8219ccf
  Gervaise Henry authored 5 years ago
  
  f8219ccf
Jan 29, 2020
- Fetch references from s3 · 5e8def40
  Gervaise Henry authored 5 years ago
  
  5e8def40
- Initial branch commit, tested and working. · 75c31810
  Jonathan Gesell authored 5 years ago
  
  75c31810
Jan 21, 2020
- Initial run for align. · 04c4e3da
  Jonathan Gesell authored 5 years ago
  
  04c4e3da
Jan 18, 2020
- Parse metadata · e32cb502
  Gervaise Henry authored 5 years ago
  
  e32cb502
- Add checks for meta repRID · 710a67d9
  Gervaise Henry authored 5 years ago
  
  710a67d9
Jan 14, 2020
- Update nextflow configs to include aws · 92951915
  Gervaise Henry authored 5 years ago
  
  92951915
Oct 08, 2019
- getData setup · e8e5d140
  Gervaise Henry authored 5 years ago
  
  e8e5d140