Commits · 0e05309f6639a7af7a80982e4290a1219ff64bec · GUDMAP_RBK / RNA-seq

Feb 19, 2021
- Update file refs in .nf to match new locations · 53c18086
  Gervaise Henry authored 4 years ago
  
  53c18086
Feb 18, 2021
- Fix missing auth file processes · f355c461
  Gervaise Henry authored 4 years ago
  
  f355c461
Feb 15, 2021
- Fix bigwig output name pattern · ddb35f4e
  Gervaise Henry authored 4 years ago
  
  ddb35f4e
Feb 13, 2021
- Link deriva credentials for upload processed files and fix logs · 466e814a
  Gervaise Henry authored 4 years ago
  
  466e814a
- Link deriva credentials for upload input/output bags · 9fd3eb5a
  Gervaise Henry authored 4 years ago
  
  9fd3eb5a
Feb 12, 2021
- Move fastq count before cp · 821a0f05
  Gervaise Henry authored 4 years ago
  
  821a0f05
- Change bdbag to use cookie locally · 785c4858
  Gervaise Henry authored 4 years ago
  
  785c4858
- Change symlink to cp for cookie in getData · 3324d1ea
  Gervaise Henry authored 4 years ago
  
  3324d1ea
- Try removing stage-as from getData · 63509f78
  Gervaise Henry authored 4 years ago
  
  63509f78
- Add quotes around find predicate · 36fc4229
  Gervaise Henry authored 4 years ago
  
  36fc4229
- Convert ls to find · bdbe616f
  Gervaise Henry authored 4 years ago
  
  bdbe616f
- Fix input folders to match nf being in base · ede40613
  Gervaise Henry authored 4 years ago
  
  ede40613
- Fix zip name · c630b961
  Gervaise Henry authored 4 years ago
  
  c630b961
- Use predicted name of inputBag zip instead of using ls · ded9c3a1
  Gervaise Henry authored 4 years ago
  
  ded9c3a1
- Add configs and nf to root for nextflow standard · a566d140
  Gervaise Henry authored 4 years ago
  
  a566d140
Feb 11, 2021
- Nextflow-ify · 0a4b00a6
  Gervaise Henry authored 4 years ago
  
  0a4b00a6
Feb 10, 2021
- Fix datahub ref download · 9d37cf2a
  Gervaise Henry authored 4 years ago
  
  9d37cf2a
Feb 04, 2021
- Fix · b507ecd7
  Gervaise Henry authored 4 years ago
  
  b507ecd7
Jan 29, 2021
- Correct reference var name · 9cccaef7
  Gervaise Henry authored 4 years ago
  
  9cccaef7
- Fix bool spike override in getRef · 3235c1c4
  Gervaise Henry authored 4 years ago
  
  3235c1c4
- Fix getRef for spike · ced21083
  Gervaise Henry authored 4 years ago
  
  ced21083
Jan 28, 2021
- Move spike/stranded override to infer (like species), not submitter · 0bb07de4
  Gervaise Henry authored 4 years ago
  
  0bb07de4
- Convert blank nan submitted metadata to No value · 37a1345e
  Gervaise Henry authored 4 years ago
  
  37a1345e
- Try excaping tabs for metadata override for report · b1cdf286
  Gervaise Henry authored 4 years ago
  
  b1cdf286
- Fix metadata echo · 329dc950
  Gervaise Henry authored 4 years ago
  
  329dc950
Jan 27, 2021
- Fix stranded override · 04c81525
  Gervaise Henry authored 4 years ago
  
  04c81525
- Fix aggrQC if brackets · 8a1299d4
  Gervaise Henry authored 4 years ago
  
  8a1299d4
- Fix params · 502328a7
  Gervaise Henry authored 4 years ago
  
  502328a7
- Make tracking upload option · df96927b
  Gervaise Henry authored 4 years ago
  
  df96927b
- Fix stranded variable · 09dd7af3
  Gervaise Henry authored 4 years ago
  
  09dd7af3
Jan 26, 2021
- Fix bracket · 14b8fc1d
  Gervaise Henry authored 4 years ago
  
  14b8fc1d
- Fix echo line · 4f9bc352
  Gervaise Henry authored 4 years ago
  
  4f9bc352
- Remove extra quote · 6b085ad6
  Gervaise Henry authored 4 years ago
  
  6b085ad6
- Fix new force var names · 57529bc9
  Gervaise Henry authored 4 years ago
  
  57529bc9
- Remove unnecessary excape · a3d8f200
  Gervaise Henry authored 4 years ago
  
  a3d8f200
- Add missing excapes · e7024f45
  Gervaise Henry authored 4 years ago
  
  e7024f45
- Fix qutes to echo · 4d50fe8f
  Gervaise Henry authored 4 years ago
  
  4d50fe8f
- Add qutes to echo · c03c60c9
  Gervaise Henry authored 4 years ago
  
  c03c60c9
- Add force params for stranded and spike · 59cb654a
  Gervaise Henry authored 4 years ago
  
  59cb654a
- Double excape slash · 0511ac1a
  Gervaise Henry authored 4 years ago
  
  0511ac1a