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Commit e618a23f authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix upload processed file ci unit

parent 686d27d4
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
Pipeline #8615 canceled with stages
......@@ -357,14 +357,14 @@ uploadProcessedFile:
cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
cookie=${cookie:11:-1}
if [ "${exist}" != "[]" ]; then
rids=$(echo ${exist} | grep -o '\"RID\":\".\{7\}' | sed 's/^.\{7\}//')
rids=$(echo ${exist} | grep -o '\"RID\":\".\{7\}' | sed 's/^.\{7\}//') &&
for rid in ${rids}; do
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/deleteEntry.py -r ${rid} -t Processed_File -o $staging.gudmap.org -c ${cookie}
echo old processed file RID deleted - ${rid}
done
echo all old processed file RIDs deleted
fi
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-upload-cli --catalog 2 --token ${cookie} staging.gudmap.org ./deriva
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-upload-cli --catalog 2 --token ${cookie} staging.gudmap.org ./deriva
- echo test processed file uploaded
- mkdir test
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' bdbag test --archiver zip
......
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