Commit e53e1eef authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Fix error output

parent 96fc2b71
Pipeline #9768 failed with stages
in 10082 minutes and 41 seconds
......@@ -2715,19 +2715,19 @@ process failPreExecutionRun {
errorDetails=""
if [ ${fastqCountError} == true ]
then
errorDetails=\$(echo ${fastqCountError_details}"\\n")
errorDetails=\$(echo "${fastqCountError_details}\\n")
elif [ ${fastqReadError} == true ]
then
errorDetails=\$(echo \$(errorDetails)${fastqReadError_details}"\\n")
errorDetails=\$(echo "\$(errorDetails)${fastqReadError_details}\\n")
elif [ ${fastqFileError} == true ]
then
errorDetails=\$(echo \$(errorDetails)${fastqFileError_details}"\\n")
errorDetails=\$(echo "\$(errorDetails)${fastqFileError_details}\\n")
elif [ ${seqtypeError} == true ]
then
errorDetails=\$(echo \$(errorDetails)${seqtypeError_details}"\\n")
errorDetails=\$(echo "\$(errorDetails)${seqtypeError_details}\\n")
elif [ ${speciesError} == true ]
then
errorDetails=\$(echo \$(errorDetails)${speciesError_details}"\\n")
errorDetails=\$(echo "\$(errorDetails)${speciesError_details}\\n")
fi
echo LOG: searching for workflow RID - BICF mRNA ${workflow.manifest.version} >> ${repRID}.failPreExecutionRun.log
......
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