Gervaise made me do it

.gitlab-ci.yml

@@ -43,7 +43,7 @@ getData:
   script:
   - singularity run 'docker://bicf/gudmaprbkfilexfer:2.0.1_indev' bdbag --version > version_bdbag.txt
   - ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
-  - unzip ./test_data/bag/Replicate_Q-Y5F6.zip
+  - unzip ./test_data/bag/staging/Replicate_Q-Y5F6.zip
   - singularity run 'docker://bicf/gudmaprbkfilexfer:2.0.1_indev' bash ./workflow/scripts/bdbagFetch.sh Replicate_Q-Y5F6 Replicate_Q-Y5F6 TEST
   - pytest -m getData
   artifacts:
@@ -432,7 +432,7 @@ override_inputBag:
   script:
   - hostname
   - ulimit -a
-  - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F6 --inputBagForce ./test_data/bag/Replicate_Q-Y5F6.zip --ci true
+  - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F6 --inputBagForce ./test_data/bag/staging/Replicate_Q-Y5F6.zip --ci true
   - find . -type f -name "multiqc_data.json" -exec cp {} ./inputBagOverride_PE_multiqc_data.json \;
   artifacts:
     name: "$CI_JOB_NAME"

workflow/rna-seq.nf

@@ -164,7 +164,7 @@ process getBag {
 
     # deriva-download replicate RID
     echo -e "LOG: fetching bag for ${repRID} in GUDMAP" >> ${repRID}.getBag.log
-    deriva-download-cli ${source} --catalog 2 ${derivaConfig} . rid=${repRID}
+    deriva-download-cli staging.gudmap.org --catalog 2 ${derivaConfig} . rid=${repRID}
     echo -e "LOG: fetched" >> ${repRID}.getBag.log
     """
 }