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Commit dee4dd77 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add echo for testing in ref ci

parent 342a7947
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
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.gitlab-ci.yml
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...@@ -459,6 +459,7 @@ human_dev: ...@@ -459,6 +459,7 @@ human_dev:
- GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2) - GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2)
- GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3) - GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)
- query=$(echo 'https://${referenceBase}/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version=${GRCv}.${GRCp}/Annotation_Version=GENCODE%20${GENCODE}') - query=$(echo 'https://${referenceBase}/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version=${GRCv}.${GRCp}/Annotation_Version=GENCODE%20${GENCODE}')
- echo 'https://${referenceBase}/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version=${GRCv}.${GRCp}/Annotation_Version=GENCODE%20${GENCODE}'
- curl --request GET ${query} > refQuery.json - curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py --returnParam URL) - refURL=$(python ./workflow/scripts/extractRefData.py --returnParam URL)
- loc=$(dirname ${refURL}) - loc=$(dirname ${refURL})
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