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GUDMAP_RBK
RNA-seq
Commits
d3ab4dd8
Commit
d3ab4dd8
authored
4 years ago
by
Gervaise Henry
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Update software versions
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!58
Develop
,
!53
Resolve "process_derivaUpload"
Pipeline
#8505
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in 2 minutes and 19 seconds
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docs/software_references_mqc.yaml
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docs/software_references_mqc.yaml
docs/software_versions_mqc.yaml
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description
:
'
This
section
describes
references
for
the
tools
used.'
plot_type
:
'
html'
data
:
|
<h3 id="references">References</h3>
<ol style="list-style-type: decimal">
<li><strong>python</strong>:</li>
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<li><strong>hisat2</strong>:</li>
</ol>
<ul>
<li>Kim ,D.,Paggi, J.M., Park, C., Bennett, C., Salzberg, S.L. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
2019
Nat Biotechnol.
2019
Aug;37(8):907-915. doi:<a href="https://doi.org/10.1038/s41587-019-0201-4">10.1038/s41587-019-0201-4</a></li>
<li>Kim ,D.,Paggi, J.M., Park, C., Bennett, C., Salzberg, S.L.
2019
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol. Aug;37(8):907-915. doi:<a href="https://doi.org/10.1038/s41587-019-0201-4">10.1038/s41587-019-0201-4</a>
.
</li>
</ul>
<ol start="7" style="list-style-type: decimal">
<li><strong>samtools</strong>:</li>
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description
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'
are
collected
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pipeline
version.'
data
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<dl class="dl-horizontal">
<dt>Python</dt><dd>v3.7.7</dd>
<dt>DERIVA</dt><dd>v1.0.0</dd>
<dt>BDBag</dt><dd>v1.5.6</dd>
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