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Commit d3ab4dd8 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update software versions

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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
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description: 'This section describes references for the tools used.'
plot_type: 'html'
data: |
<h3 id="references">References</h3>
<ol style="list-style-type: decimal">
<li><strong>python</strong>:</li>
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<li><strong>hisat2</strong>:</li>
</ol>
<ul>
<li>Kim ,D.,Paggi, J.M., Park, C., Bennett, C., Salzberg, S.L. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. 2019 Nat Biotechnol. 2019 Aug;37(8):907-915. doi:<a href="https://doi.org/10.1038/s41587-019-0201-4">10.1038/s41587-019-0201-4</a></li>
<li>Kim ,D.,Paggi, J.M., Park, C., Bennett, C., Salzberg, S.L. 2019 Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol. Aug;37(8):907-915. doi:<a href="https://doi.org/10.1038/s41587-019-0201-4">10.1038/s41587-019-0201-4</a>.</li>
</ul>
<ol start="7" style="list-style-type: decimal">
<li><strong>samtools</strong>:</li>
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description: 'are collected for pipeline version.'
data: |
<dl class="dl-horizontal">
<dt>Python</dt><dd>v3.7.7</dd>
<dt>DERIVA</dt><dd>v1.0.0</dd>
<dt>BDBag</dt><dd>v1.5.6</dd>
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