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Commit c8e1503d authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove all input dx files

parent 272afd34
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2 merge requests!76Develop,!75Env.ci
Pipeline #9531 passed with warnings with stages
in 34 minutes and 21 seconds
......@@ -1038,7 +1038,7 @@ dnanexus:
- >
jobID=$(cat dx.log | grep -oP "Job ID: \K.*")
- dx watch ${jobID} --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- status=$(dx find executions --id ${jobID} --state failed --brief -auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace})
- status=$(dx find executions --id ${jobID} --state failed --brief --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace})
- >
if [ ${status} == "" ]
then
......@@ -1048,8 +1048,8 @@ dnanexus:
fi
after_script:
- module load dxtoolkit/python27/0.294.0
- dx rm /ci-env/auth/c* --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx rm /ci-env/input/Q-Y5F6_1K.R{1,2}.fastq.gz --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx rm /ci-env/auth/* --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx rm /ci-env/input/* --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
artifacts:
when: always
paths:
......
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