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Commit b6ec0946 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix staging error rep count

parent 1a228df7
1 merge request!76Develop
Pipeline #9643 passed with stages
in 4 minutes and 39 seconds
......@@ -34,7 +34,7 @@ do
staging_total=$(expr ${staging_total} + ${temp_total})
temp_success=$(curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=\(Execution_Run\)=\(RNASeq:Execution_Run:RID\)/Workflow=${rid}/Execution_Status=Success/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l)
staging_success=$(expr ${staging_success} + ${temp_success})
temp_error=$(curl -s https://dstagingev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=\(Execution_Run\)=\(RNASeq:Execution_Run:RID\)/Workflow=${rid}/Execution_Status=Error/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l)
temp_error=$(curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=\(Execution_Run\)=\(RNASeq:Execution_Run:RID\)/Workflow=${rid}/Execution_Status=Error/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l)
staging_error=$(expr ${staging_error} + ${temp_error})
done
prod_total=0
......
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