Use staging execution run rid in ci

.gitlab-ci.yml

@@ -338,7 +338,7 @@ uploadQC:
       done
       echo all old mRNA QC RIDs deleted
     fi
-    rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e  -p "Single Read" -s forward -l 35 -w 5 -f 1 -n 'This is a test mRNA QC' -o staging.gudmap.org -c ${cookie} -u F) &&
+    rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -w 5 -f 1 -n 'This is a test mRNA QC' -o staging.gudmap.org -c ${cookie} -u F) &&
     echo ${rid} test mRNA QC created
 
 uploadProcessedFile:
@@ -351,8 +351,8 @@ uploadProcessedFile:
   script:
   - ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json
   - echo THIS IS A TEST FILE > 17-BTFJ_test.csv
-  - mkdir -p ./deriva/Seq/pipeline/17-BTFA//
-  - mv 17-BTFJ_test.csv ./deriva/Seq/pipeline/17-BTFA//17-BTFJ_test.csv
+  - mkdir -p ./deriva/Seq/pipeline/17-BTFA/17-BTG4/
+  - mv 17-BTFJ_test.csv ./deriva/Seq/pipeline/17-BTFA/17-BTG4/17-BTFJ_test.csv
   - >
     exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/RNASeq:Processed_File/Replicate=17-BTFJ) &&
     cookie=$(cat credential.json | grep -A 1 '"staging.gudmap.org\: {' | grep -o '"cookie": ".*"') &&
@@ -390,7 +390,7 @@ uploadOutputBag:
       cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
       cookie=${cookie:11:-1} &&
       loc=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host staging.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/output_bag/TEST/test.txt --parents) &&
-      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadOutputBag.py -e 18-MJ3C -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o staging.gudmap.org -c ${cookie}) &&
+      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadOutputBag.py -e 17-BTG4 -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o staging.gudmap.org -c ${cookie}) &&
       echo ${rid} test output bag created
     else
       rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&