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+!.gitkeep

CHANGELOG.md

+# v0.0.1 (in development)
+**User Facing**
+
+**Background**
+
+*Known Bugs*

LICENSE

+NOT YET LICENSED

README.md

+|*master*|*develop*|
+|:-:|:-:|
+|[![Build Status](https://git.biohpc.swmed.edu/BICF/gudmap_rbk/rna-seq/badges/master/build.svg)](https://git.biohpc.swmed.edu/BICF/gudmap_rbk/rna-seq/commits/master)|[![Build Status](https://git.biohpc.swmed.edu/BICF/gudmap_rbk/rna-seq/badges/develop/build.svg)](https://git.biohpc.swmed.edu/BICF/gudmap_rbk/rna-seq/commits/develop)|
+
+[![DOI]()]()
+
+GUDMAP/RBK RNA-Seq Pipeline
+===========================
+
+Introduction
+------------
+
+
+To Run:
+-------
+
+* Available parameters:
+* FULL EXAMPLE:
+  ```
+  nextflow run workflow/main.nf
+  ```
+* Design example:
+
+
+
+[**CHANGELOG**](https://git.biohpc.swmed.edu/BICF/gudmap_rbk/rna-seq/blob/develop/CHANGELOG.md)
+
+Credits
+-------
+This worklow is was developed by [Bioinformatic Core Facility (BICF), Department of Bioinformatics](http://www.utsouthwestern.edu/labs/bioinformatics/)
+
+
+Please cite in publications: Pipeline was developed by BICF from funding provided by **Cancer Prevention and Research Institute of Texas (RP150596)**.

docs/references.md

+### References

workflow/main.nf

+#!/usr/bin/env nextflow