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Commit 90aeff3e authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update docs

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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
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...@@ -6,6 +6,7 @@ ...@@ -6,6 +6,7 @@
* Upload input bag * Upload input bag
* Upload execution run * Upload execution run
* Upload mRNA QC * Upload mRNA QC
* Create and upload output bag
**Background** **Background**
* Remove (comment out) option to pull references from S3 * Remove (comment out) option to pull references from S3
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...@@ -44,7 +44,7 @@ To Run: ...@@ -44,7 +44,7 @@ To Run:
* **aws_ondemand** = AWS Batch on-demand instant requests * **aws_ondemand** = AWS Batch on-demand instant requests
* **aws_spot** = AWS Batch spot instance requests * **aws_spot** = AWS Batch spot instance requests
* `--email` email address(es) to send failure notification (comma separated) ***(optional)***: * `--email` email address(es) to send failure notification (comma separated) ***(optional)***:
* e.g: `--email 'venkat.malladi@utsouthwestern.edu,Gervaise.Henry@UTSouthwestern.edu'` * e.g: `--email 'Venkat.Malladi@utsouthwestern.edu,Gervaise.Henry@UTSouthwestern.edu'`
* NOTES: * NOTES:
* once deriva-auth is run and authenticated, the two files above are saved in ```~/.deriva/``` (see official documents from [deriva](https://github.com/informatics-isi-edu/deriva-client#installer-packages-for-windows-and-macosx) on the lifetime of the credentials) * once deriva-auth is run and authenticated, the two files above are saved in ```~/.deriva/``` (see official documents from [deriva](https://github.com/informatics-isi-edu/deriva-client#installer-packages-for-windows-and-macosx) on the lifetime of the credentials)
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