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Commit 8a404d50 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix input of parse read length

parent 484d48ed
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2 merge requests!37v0.0.1,!36Metadata output update
Pipeline #7781 passed with stages
in 1 hour, 20 minutes, and 10 seconds
......@@ -238,7 +238,11 @@ process parseMetadata {
echo -e "LOG: species metadata parsed: \${species}" >> ${repRID}.parseMetadata.log
# get read length metadata
readLength=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experiment}" -p readLength)
readLength=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experimentSettings}" -p readLength)
if [ "\${readLength}" == "nan"]
then
readLength="Not Entered"
fi
echo -e "LOG: read length metadata parsed: \${readLength}" >> ${repRID}.parseMetadata.log
# save design file
......
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