.gitlab-ci.yml

CHANGELOG.md

README.md

conftest.py

docs/dag.png

test_data/Replicate_For_Input_Bag(test).json

test_data/createTestData.sh

workflow/conf/Replicate_For_Input_Bag.json

workflow/conf/aws.config

workflow/conf/biohpc.config

workflow/nextflow.config

workflow/rna-seq.nf

workflow/scripts/parse_meta.py

workflow/scripts/upload_execution_run.py

workflow/scripts/upload_output_bag.py

workflow/scripts/upload_qc.py

workflow/tests/test_alignReads.py

workflow/tests/test_completion.py

workflow/tests/test_dedupReads.py

workflow/tests/test_makeBigWig.py