Merge branch 'develop' into 'master'
Update rna-seq.nf See merge request !95
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- .gitlab-ci.yml 21 additions, 96 deletions.gitlab-ci.yml
- CHANGELOG.md 22 additions, 0 deletionsCHANGELOG.md
- README.md 10 additions, 4 deletionsREADME.md
- conf/multiqc_config.yaml 1 addition, 1 deletionconf/multiqc_config.yaml
- docs/dag.png 0 additions, 0 deletionsdocs/dag.png
- nextflow.config 4 additions, 3 deletionsnextflow.config
- rna-seq.nf 59 additions, 143 deletionsrna-seq.nf
- workflow/conf/multiqc_config.yaml 1 addition, 1 deletionworkflow/conf/multiqc_config.yaml
- workflow/scripts/calculateTPM.R 8 additions, 0 deletionsworkflow/scripts/calculateTPM.R
- workflow/scripts/convertGeneSymbols.R 8 additions, 0 deletionsworkflow/scripts/convertGeneSymbols.R
- workflow/scripts/delete_entry.py 9 additions, 1 deletionworkflow/scripts/delete_entry.py
- workflow/scripts/extract_ref_data.py 6 additions, 0 deletionsworkflow/scripts/extract_ref_data.py
- workflow/scripts/generate_references.py 1 addition, 1 deletionworkflow/scripts/generate_references.py
- workflow/scripts/generate_versions.py 6 additions, 7 deletionsworkflow/scripts/generate_versions.py
- workflow/scripts/parse_meta.py 6 additions, 0 deletionsworkflow/scripts/parse_meta.py
- workflow/scripts/tin_hist.py 6 additions, 0 deletionsworkflow/scripts/tin_hist.py
- workflow/scripts/upload_execution_run.py 10 additions, 2 deletionsworkflow/scripts/upload_execution_run.py
- workflow/scripts/upload_input_bag.py 10 additions, 2 deletionsworkflow/scripts/upload_input_bag.py
- workflow/scripts/upload_output_bag.py 11 additions, 3 deletionsworkflow/scripts/upload_output_bag.py
- workflow/scripts/upload_qc.py 11 additions, 3 deletionsworkflow/scripts/upload_qc.py
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