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Commit 6a4aed1c authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix mouse version variable name in ci

parent e0623f1b
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
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.gitlab-ci.yml
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...@@ -479,7 +479,7 @@ mouse_dev: ...@@ -479,7 +479,7 @@ mouse_dev:
- ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt - ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
- referenceBase=dev.gudmap.org - referenceBase=dev.gudmap.org
- refName=GRCm - refName=GRCm
- references=$(echo ${referenceBase}/${refName}${refMuVersion}) - references=$(echo ${referenceBase}/${refName}${refMoVersion})
- GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1) - GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1)
- GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2) - GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2)
- GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3) - GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)
...@@ -530,7 +530,7 @@ mouse_staging: ...@@ -530,7 +530,7 @@ mouse_staging:
- referenceBase=staging.gudmap.org - referenceBase=staging.gudmap.org
- refName=GRCm - refName=GRCm
- refHuVersion=38.p6.vM22 - refHuVersion=38.p6.vM22
- references=$(echo ${referenceBase}/${refName}${refMuVersion}) - references=$(echo ${referenceBase}/${refName}${refMoVersion})
- GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1) - GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1)
- GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2) - GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2)
- GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3) - GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)
...@@ -581,7 +581,7 @@ mouse_prod: ...@@ -581,7 +581,7 @@ mouse_prod:
- referenceBase=www.gudmap.org - referenceBase=www.gudmap.org
- refName=GRCm - refName=GRCm
- refHuVersion=38.p6.vM22 - refHuVersion=38.p6.vM22
- references=$(echo ${referenceBase}/${refName}${refMuVersion}) - references=$(echo ${referenceBase}/${refName}${refMoVersion})
- GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1) - GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1)
- GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2) - GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2)
- GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3) - GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)
......
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