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Commit 63509f78 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Try removing stage-as from getData

parent 36fc4229
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2 merge requests!76Develop,!70Dnanexus
Pipeline #9238 failed with stages
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rna-seq.nf
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...@@ -240,7 +240,7 @@ process getData { ...@@ -240,7 +240,7 @@ process getData {
input: input:
path script_bdbagFetch path script_bdbagFetch
path cookies, stageAs: "deriva-cookies.txt" from bdbag path cookies from bdbag
path inputBag from inputBag_getData path inputBag from inputBag_getData
output: output:
...@@ -258,7 +258,7 @@ process getData { ...@@ -258,7 +258,7 @@ process getData {
# link deriva cookie for authentication # link deriva cookie for authentication
echo -e "LOG: linking deriva cookie" >> ${repRID}.getData.log echo -e "LOG: linking deriva cookie" >> ${repRID}.getData.log
mkdir -p ~/.bdbag mkdir -p ~/.bdbag
ln -sf `readlink -e deriva-cookies.txt` ~/.bdbag/deriva-cookies.txt ln -sf `readlink -e cookies.txt` ~/.bdbag/deriva-cookies.txt
echo -e "LOG: linked" >> ${repRID}.getData.log echo -e "LOG: linked" >> ${repRID}.getData.log
# get bag basename # get bag basename
......
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