Replace species inference with seqwho (634fd8a3) · Commits · GUDMAP_RBK / RNA-seq · GitLab

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GUDMAP_RBK
RNA-seq
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634fd8a3

Commit 634fd8a3 authored 4 years ago by

Gervaise Henry

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Replace species inference with seqwho

parent 50715724

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2 merge requests!76Develop,!71Seqwho

Pipeline #9279 failed

Changes 9
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.gitlab-ci.yml 51 additions, 31 deletions

.gitlab-ci.yml
docs/software_references_mqc.yaml 7 additions, 1 deletion

docs/software_references_mqc.yaml
workflow/conf/aws.config 16 additions, 12 deletions

workflow/conf/aws.config
workflow/conf/biohpc.config 12 additions, 9 deletions

workflow/conf/biohpc.config
workflow/nextflow.config 12 additions, 9 deletions

workflow/nextflow.config
workflow/rna-seq.nf 868 additions, 890 deletions

workflow/rna-seq.nf
workflow/scripts/generate_versions.py 2 additions, 0 deletions

workflow/scripts/generate_versions.py
workflow/scripts/get_updated_badge_info.sh 2 additions, 0 deletions

workflow/scripts/get_updated_badge_info.sh
workflow/tests/test_seqwho.py 15 additions, 0 deletions

workflow/tests/test_seqwho.py

with 985 additions and 952 deletions

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