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Commit 5dca94bb authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix dx's

parent 2b746c8c
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2 merge requests!76Develop,!75Env.ci
Pipeline #9525 passed with warnings with stages
in 41 minutes and 30 seconds
......@@ -1037,7 +1037,7 @@ dnanexus:
> dx.log
- >
jobID=$(cat dx.log | grep -oP "Job ID: \K.*")
- dx watch ${jobID} -auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx watch ${jobID} --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- status=$(dx find executions --id ${jobID} --state failed --brief -auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace})
- >
if [ ${status} == "" ]
......@@ -1049,7 +1049,7 @@ dnanexus:
after_script:
- module load dxtoolkit/python27/0.294.0
- dx rm /ci-env/auth/c* --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx rm /ci-env/input/Q-Y5F6_1M.R{1,2}.fastq.gz --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx rm /ci-env/input/Q-Y5F6_1K.R{1,2}.fastq.gz --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
artifacts:
paths:
- badges/
......
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