.gitignore

.gitlab-ci.yml

.gitlab/merge_request_templates/Merge_Request.md

CHANGELOG.md

README.md

docs/RNA-Seq Pipeline Design Flowchart.drawio

docs/RNA-Seq Pipeline Design Flowchart.jpg

docs/RNA-Seq Pipeline Design Process Table.docx

docs/RNA-Seq Pipeline Design Process Table.pdf

docs/bicf_logo.png

docs/dag.png

docs/references.md

docs/software_references_mqc.yaml

docs/software_versions_mqc.yaml

test_data/Replicate_For_Input_Bag(test).json

test_data/createTestData.sh

workflow/conf/Execution_Run_For_Output_Bag.json

workflow/conf/Replicate_For_Input_Bag.json

workflow/conf/aws.config

workflow/conf/biohpc.config