Fix infer with species error

4c1da891 · Gervaise Henry · cd641050 · 4c1da891
Commit 4c1da891 authored 4 years ago by Gervaise Henry
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -842,7 +842,7 @@ process inferMetadata {
      fi
    fi

-    if [ !\${speciesError} ]
+    if !\${speciesError}
    then
      # infer experimental setting from dedup bam
      echo -e "LOG: infer experimental setting from dedup bam" >> ${repRID}.inferMetadata.log