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Commit 4beb755a authored by Gervaise Henry's avatar Gervaise Henry 🤠
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Remove excape from !

parent dadcd31d
2 merge requests!77Docs,!76Develop
Pipeline #9212 passed with stages
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workflow/scripts/get_updated_rep_count.sh
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− 2
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...@@ -18,7 +18,7 @@ dev_success=0 ...@@ -18,7 +18,7 @@ dev_success=0
dev_error=0 dev_error=0
for rid in ${dev_workflow_RID} for rid in ${dev_workflow_RID}
do do
temp_total=$(curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=(Execution_Run)=(RNASeq:Execution_Run:RID)/Workflow=${rid}/\!Execution_Status=In-progress/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l) temp_total=$(curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=(Execution_Run)=(RNASeq:Execution_Run:RID)/Workflow=${rid}/!Execution_Status=In-progress/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l)
dev_total=$(expr ${dev_total} + ${temp_total}) dev_total=$(expr ${dev_total} + ${temp_total})
temp_sucess=$(curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=(Execution_Run)=(RNASeq:Execution_Run:RID)/Workflow=${rid}/Execution_Status=Success/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l) temp_sucess=$(curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=(Execution_Run)=(RNASeq:Execution_Run:RID)/Workflow=${rid}/Execution_Status=Success/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l)
dev_success=$(expr ${dev_success} + ${temp_success}) dev_success=$(expr ${dev_success} + ${temp_success})
...@@ -30,7 +30,7 @@ staging_success=0 ...@@ -30,7 +30,7 @@ staging_success=0
staging_error=0 staging_error=0
for rid in ${staging_workflow_RID} for rid in ${staging_workflow_RID}
do do
temp_total=$(curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=(Execution_Run)=(RNASeq:Execution_Run:RID)/Workflow=${rid}/\!Execution_Status=In-progress/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l) temp_total=$(curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=(Execution_Run)=(RNASeq:Execution_Run:RID)/Workflow=${rid}/!Execution_Status=In-progress/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l)
staging_total=$(expr ${staging_total} + ${temp_total}) staging_total=$(expr ${staging_total} + ${temp_total})
temp_sucess=$(curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=(Execution_Run)=(RNASeq:Execution_Run:RID)/Workflow=${rid}/Execution_Status=Success/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l) temp_sucess=$(curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/Q:=RNASeq:mRNA_QC/E:=(Execution_Run)=(RNASeq:Execution_Run:RID)/Workflow=${rid}/Execution_Status=Success/\$Q | grep -o \"Replicate\".*,\"Paired_End | grep -oP "(?<=\"Replicate\":\").*(?=\",\"Paired_End)" | sort | uniq | wc -l)
staging_success=$(expr ${staging_success} + ${temp_success}) staging_success=$(expr ${staging_success} + ${temp_success})
......
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