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Commit 4a8af8be authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Revert study split to 5 parallel runs

parent 535d6908
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2 merge requests!39v0.0.2,!38Resolve "Add input bagit to ouput"
Pipeline #7864 failed with stages
in 34 minutes and 15 seconds
......@@ -14,7 +14,7 @@ python3 ./workflow/scripts/splitStudy.py -s $1
# run pipeline on replicate RIDs in parallel
module load nextflow/20.01.0
module load singularity/3.5.3
while read repRID; do echo ${repRID}; sleep 15; done < "$1_studyRID.csv" | xargs -P 10 -I {} nextflow -q run workflow/rna-seq.nf --repRID {}
while read repRID; do echo ${repRID}; sleep 15; done < "$1_studyRID.csv" | xargs -P 5 -I {} nextflow -q run workflow/rna-seq.nf --repRID {}
# cleanup study RID files
rm $1_studyRID.json
......
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