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Commit 412d92df authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Make by study script run nextflow with quiet flag

parent e91b3300
2 merge requests!39v0.0.2,!38Resolve "Add input bagit to ouput"
......@@ -10,7 +10,7 @@ python3 ./workflow/scripts/splitStudy.py -s $1
# run pipeline on replicate RIDs in parallel
module load nextflow/20.01.0
module load singularity/3.5.3
while read repRID; do echo ${repRID}; sleep 10; done < "$1_studyRID.csv" | xargs -P 25 -I {} nextflow run workflow/rna-seq.nf --repRID {}
while read repRID; do echo ${repRID}; sleep 10; done < "$1_studyRID.csv" | xargs -P 25 -I {} nextflow -q run workflow/rna-seq.nf --repRID {}
# cleanup study RID files
rm $1_studyRID.json
......
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