Add new process to split bdbag by replicates for parallel getData (347d8e1a) · Commits · GUDMAP_RBK / RNA-seq · GitLab

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GUDMAP_RBK
RNA-seq
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347d8e1a

Commit 347d8e1a authored 5 years ago by

Gervaise Henry

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Add new process to split bdbag by replicates for parallel getData

parent 2b4b2e9b

3 merge requests!37v0.0.1,!4Develop,!2Resolve "process_getData"

Changes 12

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.gitignore 0 additions, 1 deletion

.gitignore
docs/GUDMAP.RBK Pipeline.docx 0 additions, 0 deletions

docs/GUDMAP.RBK Pipeline.docx
nextflow.config 0 additions, 5 deletions

nextflow.config
workflow/conf/biohpc.config 3 additions, 0 deletions

workflow/conf/biohpc.config
workflow/docker/.gitkeep 0 additions, 0 deletions

workflow/docker/.gitkeep
workflow/docker/getData 0 additions, 0 deletions

workflow/docker/getData
workflow/docker/images/.gitkeep 0 additions, 0 deletions

workflow/docker/images/.gitkeep
workflow/docker/temp 0 additions, 14 deletions

workflow/docker/temp
workflow/rna-seq.nf 48 additions, 16 deletions

workflow/rna-seq.nf
workflow/scripts/modifyFetch.py 5 additions, 3 deletions

workflow/scripts/modifyFetch.py
workflow/scripts/splitBag.sh 7 additions, 0 deletions

workflow/scripts/splitBag.sh
workflow/scripts/splitFetch.py 25 additions, 0 deletions

workflow/scripts/splitFetch.py

with 88 additions and 39 deletions

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