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Commit 2e094a98 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix fail pre execution run

parent 92441d0e
2 merge requests!58Develop,!56Resolve "Detect error in inferMetadata for tracking"
Pipeline #8835 passed with stages
in 2 minutes and 42 seconds
......@@ -2210,7 +2210,7 @@ process failExecutionRun {
pipelineError_details=\$(echo \${pipelineError_details}"|Species|${speciesMeta}|${speciesInfer}|\\n")
fi
pipelineError_details=\${pipelineError_details::-2}
rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID})
rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d \"\${pipelineError_details}\" -o ${source} -c \${cookie} -u ${executionRunRID})
echo LOG: execution run RID marked as error - \${rid} >> ${repRID}.failExecutionRun.log
fi
"""
......
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