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Commit 2255d5f8 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix CI unit uploadInputBag

parent 33993f75
2 merge requests!58Develop,!53Resolve "process_derivaUpload"
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.gitlab-ci.yml
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...@@ -295,7 +295,7 @@ uploadInputBag: ...@@ -295,7 +295,7 @@ uploadInputBag:
- echo THIS IS A TEST FILE > test.txt - echo THIS IS A TEST FILE > test.txt
- md5=$(md5sum ./test.txt | awk '{ print $1 }') - md5=$(md5sum ./test.txt | awk '{ print $1 }')
- size=$(wc -c < ./test.txt) - size=$(wc -c < ./test.txt)
- exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://${source}/ermrest/catalog/2/entity/RNASeq:Input_Bag/File_MD5=${md5}) - exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Input_Bag/File_MD5=${md5})
- > - >
if [ "${exist}" == "[]" ]; then if [ "${exist}" == "[]" ]; then
cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"')
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