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Jonathan Gesell authoredc54a846c
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biohpc.config 923 B
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process {
executor = 'slurm'
queue = 'super'
// Process specific configuration
withName:getData {
container = 'docker://bicf/bdbag:1.0'
}
}
trace {
enabled = true
file = 'pipeline_trace.txt'
fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss'
}
timeline {
enabled = true
file = 'timeline.html'
}
report {
enabled = true
file = 'report.html'
}
tower {
accessToken = '3ade8f325d4855434b49aa387421a44c63e3360f'
enabled = true
}
singularity {
enabled = true
cacheDir = '/project/BICF/BICF_Core/s181706/github/gudmap/rna-seq/workflow/singularity'
}
env {
http_proxy = "http://proxy.swmed.edu:3128"
https_proxy = "http://proxy.swmed.edu:3128"
HTTP_PROXY = "http://proxy.swmed.edu:3128"
HTTPS_PROXY = "http://proxy.swmed.edu:3128"
all_proxy = "http://proxy.swmed.edu:3128"
ALL_PROXY = "http://proxy.swmed.edu:3128"
}