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}
process {
withName:trackStart {
executor = 'local'
}
withName:getBag {
executor = 'local'
}
withName:getData {
machineType = 'mem1_ssd1_v2_x16'
}
withName:parseMetadata {
executor = 'local'
}
withName:trimData {
machineType = 'mem1_ssd1_v2_x16'
}
withName:getRefInfer {
machineType = 'mem1_ssd1_v2_x16'
}
withName:downsampleData {
executor = 'local'
}
withName:alignSampleData {
machineType = 'mem3_ssd1_v2_x16'
}
withName:inferMetadata {
machineType = 'mem1_ssd1_v2_x16'
}
withName:checkMetadata {
executor = 'local'
}
withName:getRef {
machineType = 'mem1_ssd1_v2_x16'
}
withName:alignData {
queue = '256GB,256GBv1'
}
withName:dedupData {
machineType = 'mem1_ssd1_v2_x16'
}
withName:countData {
machineType = 'mem1_ssd1_v2_x16'
}
withName:makeBigWig {
machineType = 'mem1_ssd1_v2_x16'
}
withName:fastqc {
machineType = 'mem1_ssd1_v2_x16'
}
withName:dataQC {
machineType = 'mem1_ssd1_v2_x16'
}
withName:aggrQC {
executor = 'local'
}
withName:uploadInputBag {
executor = 'local'
}
withName:uploadExecutionRun {
executor = 'local'
}
withName:uploadQC {
executor = 'local'
}
withName:uploadProcessedFile {
executor = 'local'
}
withName:uploadOutputBag {
executor = 'local'
}
withName:finalizeExecutionRun {
executor = 'local'
}
withName:failPreExecutionRun {
executor = 'local'
}
withName:failExecutionRun {
executor = 'local'
}
withName:uploadQC_fail {
executor = 'local'
}
}
docker {
enabled = true
}